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cosmx human lung dataset  (Vizgen Inc)

 
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    Vizgen Inc cosmx human lung dataset
    Cosmx Human Lung Dataset, supplied by Vizgen Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/cosmx/breast+cancer+dataset+ffpe/pmc12934110-74-26-15
    Average 86 stars, based on 1 article reviews
    cosmx human lung dataset - by Bioz Stars, 2026-09
    86/100 stars

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    Related Articles

    other:

    Article Title: Optimizing Xenium In Situ data utility by quality assessment and best-practice analysis workflows.
    Article Snippet: Datasets from open-source technologies were obtained from their original publications (HS-ISS20, MERFISH24), and datasets from commercial platforms were downloaded from the companies web portals (CosMx, Vizgen and Resolved Biosciences).

    Article Title: SpaRx: Elucidate single-cell spatial heterogeneity of drug responses for personalized treatment
    Article Snippet: The 2k genes are randomly selected, while the 853 and 500 genes are selected based on the RNA panels used in the NanoString CosMx and the Vizgen MERSCOPE data, respectively.

    Article Title: RNA2seg: a generalist model for cell segmentation in image-based spatial transcriptomics.
    Article Snippet: [34] External Datasets: For training and benchmarking, we used CosMx and Vizgen.

    Spatial Transcriptomics:

    Article Title: Microenvironment-aware spatial modeling for accurate inference of cell identity
    Article Snippet: .. Technically, most high-resolution spatial transcriptomics platforms, such as MERFISH/Vizgen, CosMx, and Xenium, rely on targeted gene panels designed to mark specific cell types. ..



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    Image Search Results


    Alcohol cessation promotes transcriptomic changes in hepatocytes and non-parenchymal cell clusters. Mice were fed ad libitum WD with 20% alcohol in the drinking water for 20 weeks (WDA). For disease resolution mice were placed then on chow diet with plain water for 4 weeks (Res). Spatial transcriptomics analysis of livers from these mice (n = 2 per group, males) using 1000-plex assay from Nanostrings using CosMx platform. Cell boundary was assigned based on nuclear and membrane staining. Cells were analyzed using Seurat v5 package. ( A ) Top . Sirius red staining of the section adjacent to section used for transcriptional profiling. Bottom. UMAP plot of cell clusters. ( B and C ) Gene expression of genes enriched in individual clusters. ( D ) Cell abundance for each cluster across 45 FOVs. Average proportion for each cluster in WDA and Res FOVs (n = 22–23 per condition). ∗ Padj < .01; ∗∗∗ Padj < .0001. ( E ) Fold change for indicated gene transcripts between Res and WDA samples in males (M) and females (F).

    Journal: Cellular and Molecular Gastroenterology and Hepatology

    Article Title: Acute Phase Response-driven Hepatic Niche Remodeling Promotes Fibrosis Resolution After Alcohol Cessation

    doi: 10.1016/j.jcmgh.2025.101689

    Figure Lengend Snippet: Alcohol cessation promotes transcriptomic changes in hepatocytes and non-parenchymal cell clusters. Mice were fed ad libitum WD with 20% alcohol in the drinking water for 20 weeks (WDA). For disease resolution mice were placed then on chow diet with plain water for 4 weeks (Res). Spatial transcriptomics analysis of livers from these mice (n = 2 per group, males) using 1000-plex assay from Nanostrings using CosMx platform. Cell boundary was assigned based on nuclear and membrane staining. Cells were analyzed using Seurat v5 package. ( A ) Top . Sirius red staining of the section adjacent to section used for transcriptional profiling. Bottom. UMAP plot of cell clusters. ( B and C ) Gene expression of genes enriched in individual clusters. ( D ) Cell abundance for each cluster across 45 FOVs. Average proportion for each cluster in WDA and Res FOVs (n = 22–23 per condition). ∗ Padj < .01; ∗∗∗ Padj < .0001. ( E ) Fold change for indicated gene transcripts between Res and WDA samples in males (M) and females (F).

    Article Snippet: Spatial transcriptomics analysis of livers from these mice (n = 2 per group, males) using 1000-plex assay from Nanostrings using CosMx platform.

    Techniques: Plex Assay, Membrane, Staining, Gene Expression